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biosignal-analysis

This repo is for tutorials of biosignal analysis

bleep

Spatially Resolved Gene Expression Prediction from H&E Histology Images via Bi-modal Contrastive Learning

bookchapter-rna-seq-analyses

Best practice RNA-Seq analysis pipeline for reference-based RNA-Seq analysis

brew

🍺 The missing package manager for macOS (or Linux)

bwa-mem2

The next version of bwa-mem

campa

Conditional Autoencoders for Multiplexed Pixel Analysis

cancerrisknet

cbi_reference_genomes

Scripts for downloading reference genomes and annotations

cbw2023_met_data

Data for CBW 2023 metabolomics workshop

cbw_bfx_genomic_medecine_module2

workshop for bioinformatics.ca Bioinformatics for genomics medecine Module 2

ccle_heterogeneity

cellannotationtutorial

Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods

cellphonedb

CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.

cellpose

a generalist algorithm for cellular segmentation with human-in-the-loop capabilities

cellprofiler-plugins

Community-contributed and experimental CellProfiler modules.

cellsnake

Cellsnake tool main repo

cfrna-seq-pipeline-ngo-manuscript-2019

This pipeline contains the data processing steps used for Thuy Ngo's 2019 cell-free RNA manuscript

chart-doctor

Sample files to accompany the FT's Chart Doctor column

cheatsheets

Official Matplotlib cheat sheets

cheatsheets-1

Posit Cheat Sheets - Can also be found at https://posit.co/resources/cheatsheets/.

chem-map

chiasm

A browser based environment for interactive data visualizations.

chip-seq-pipeline2

ENCODE ChIP-seq pipeline

clam

Data-efficient and weakly supervised computational pathology on whole slide images - Nature Biomedical Engineering

codes-for-medium-articles

Codes for Medium Articles

coding_videos

commot

comparesequence

Code used to compare sequencing techs

complete-python-3-bootcamp

Course Files for Complete Python 3 Bootcamp Course on Udemy

computational-genome-analysis

Website for Computational Exome and Genome Analysis