rimanb Goto Github PK

st_biostatistical_analysis

Code to investigate hallmark cytokine transcripts in ncISDs

st_chcc-cca

Process and analyze spatial transcriptomic data for cHCC CCA reclassification project

stat_rethinking_2022

Statistical Rethinking course winter 2022

stdeconvolve

Reference-free cell-type deconvolution of multi-cellular spatially resolved transcriptomics data

stellar

stereopy

A toolkit of spatial transcriptomic analysis.

stew

Uncover spatially informed shared variations underlying single-cell spatial transcriptomics with STew.

stromal_subclasses

code for data processing and visualisation associated with the stromal subclasses manuscript

tail-loss-primates

tidyverse

Easily install and load packages from the tidyverse

tigerasi

a lightweight python interface for ASI brand Tiger Controllers

tiny_python_projects

Code for Tiny Python Projects (Manning, 2020, ISBN 1617297518). Learning Python through test-driven development of games and puzzles.

tipc

TIPC: Tumor-Immune Partitioning and Clustering

tomographer

The Tomographer package implements the mathematical spatial image reconstruction of any set of read counts as described in the following article: https://www.nature.com/articles/s41587-021-00879-7

training-modules

Materials for short, half-day workshops

transformgampoi-paper

trimmomatic

tute

tutorials

Tutorials in datamining and bioinformatics

user-training

HMS Research Computing User Training

uta_cancer_search

variant-calling-pipeline-gatk4

Variant Calling Pipeline Using GATK4 and Nextflow

visinity

vision

Signature Analysis and Visualization for Single-Cell RNA-seq

web

winter23

workshop-spatial

workshops

zhang_lab_manual

The Zhang Lab Manual: Lab principles and activities, Handbook for reproducible computational research, Learning resources, Expectations and achievements, etc