pythseq Goto Github PK
Name: pythseq
Type: User
Company: https://www.cnrs.fr/fr
Bio: IR-CNRS (Bioinformatician)
Twitter: pythseq
Location: France
Name: pythseq
Type: User
Company: https://www.cnrs.fr/fr
Bio: IR-CNRS (Bioinformatician)
Twitter: pythseq
Location: France
A genomic k-mer counter (and sequence utility) with nice features.
A scalable high-throughput metabolic and biogeochemical functional trait profiler
R and bash scripts for сomputational insight into intraspecies distinctions in Pseudoalteromonas distincta: carotenoid-like synthesis traits and genomic heterogeneity
MetaCarvel: A scaffolder for metagenomes
MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics
Workflow to build metagenome assembled genomes (MAG) from shotgun sequenced metagenomes. This is taught in NCGAS Metagenomics workshop
Scripts for processing output of kaiju from sequencing reads to output stacked bar plots
The code deposited in this site contains the necessary scripts to integrate, standardise and generate taxonomic annotation matrices at the eight basic levels of taxonomic lineage: domain, phylum, class, order, family, genus, species and subspecies. These tools provide the possibility of comparing taxonomic annotation results obtained by different methods and databases.
This is a collection of tools that should help with downstream analysis of data obtained from metagenomic binning.
NastyBugs: a simple method for extracting antimicrobial resistance information from metagenomes
Metagenomica
for long reads
Hands-on practical for learning metagenomic workflow, from binning to annotation.
Team162 metagenome pipeline
Workflow for metagenome assembled genomes generation.
Long-read metagenomic analysis
A pipeline for construction and graphical visualization of annotated pangenome networks.
Metaphor: a general-purpose workflow for assembly and binning of metagenomes
MetaPORE – Chiu Laboratory, University of California, San Francisco
METAREP: JCVI Metagenomics Reports - an open source tool for high-performance comparative metagenomics
Pipeline for major biological analyses.
Sequence-based Protein GO / Functional Predictor
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.