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fastp

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting...)

fastpath

A program to find the path through a network of nodes.

fastq-pair

Match up paired end fastq files quickly and efficiently.

fastqpuri

fastq quality assessment and filtering tool

fastspar

Fast implementation of SparCC in C++

fasttree

FastTree and FastList controls

fastxtend

A package to perform NGS quality control

feast

Fast expectation maximization source tracking

federated_learning_workshop

Content for the Tutorial: Practical Introduction to Federated Learning given on Oct. 29, 2021. See https://digicosme.cnrs.fr/ecole-thematique-2021-graph-as-models-in-life-sciences-machine-learning-and-integrative-approaches/

feelnc

FEELnc : FlExible Extraction of LncRNA

fes

Code and Resources for "Feature Engineering and Selection: A Practical Approach for Predictive Models" by Kuhn and Johnson

figtree

Automatically exported from code.google.com/p/figtree

filtar

Using RNA-Seq data to improve microRNA target prediction accuracy in animals

filtlong

quality filtering tool for long reads

find-cags

Find Co-Abundant Groups of Genes

finder

A fully automated gene annotator from RNA-Seq expression data

findtelomeres

A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files

fine-scale-mutation-spectrum

fire

flag

flaimapper

:honeybee: Fragment Location Annotation Identification Mapper: computational annotation of small ncRNA-derived fragments using RNA-seq high-throughput data

flair

decorate your R code

flappie

Flip-flop basecaller for Oxford Nanopore reads

flash

flexidot

Highly customizable, ambiguity-aware dotplots for visual sequence analyses

flipbookr

Presenting code step-by-step and side-by-side with its output

flora

workFLOw for Rnaseq analyses of the Amocyst project

flowgrid

flye

Fast and accurate de novo assembler for single molecule sequencing reads

forestqc

Random forest classifier for variants quality control