jmzeng1314 / annoprobe Goto Github PK

Could you please help us? Or give us a guide to how handle the shiny app. Thank U very much.

What is the difference between the three?The results obtained by different methods do not seem to be consistent, the same probe corresponds to different gene names.

For GPL4861, showed error:

Error in idmap(gpl, type = "pipe") :
This platform is not in our list, please use our shinyAPP to custom annotate your probe sequences, or ask us to process and then update the R package!

ids=idmap('GPL21572',type='soft',destdir=tempdir())

This platform is not in our list, please use our shinyAPP to custom annotate your probe sequences, or ask us to process and then update the R package!

shinyApp是哪个呀。。。

Hi,
GPL32193 is not in list，am extremely grateful for your assistance in resolving this issue.
Error is as follows:
Error in idmap(gpl = "GPL32193", type = "soft", mirror = "tencent", destdir = getwd()) :
This platform is not in our list, please use our shinyAPP to custom annotate your probe sequences, or ask us to process and then update the R package!

Thanks for providing this package. Howeve, I have encontered this after I had prepared all data as needed.
And the Error message was very strange:"gene_number must less than 0"
I have no idea how to solve this, can you please give me a direction?

你好~
谢谢你提供的基因信息注释的包~
我在使用AnnoProbe制作InferCNV的输入文件的时候，是把10x测序结果的基因名作为annoGene函数的参数输入的，但是结果显示geneInfor = annoGene(rownames(GBM),"SYMBOL",'human')
Warning message: In annoGene(rownames(GBM), "SYMBOL", "human") : 26.55% of input IDs are fail to annotate...
有26.55%的基因没有注释，请问这是什么原因造成的呢？有什么好的解决办法吗？