hongyuanwu Goto Github PK

2019-03-01_spcc_reproducible-r

Class materials for Reproducible Research with RStudio, a workshop at the 2019 Statistical Practice in Cancer Conference

abcg2

activepathways

Integrative pathway enrichment analysis of multivariate omics data

aidrugresponse

analysis_pipeline

TOPMed analysis pipeline

annoprobe

astargetseq

auto_adipo_diff

Code for the Cells paper (Transcriptional Regulation of Autophagy Genes via Stage-Specific Activation of CEBPB and PPARG during Adipogenesis)

automated_drug_repositioning_cmap

bc-and-m6a

bds-files

Supplementary files for my book, "Bioinformatics Data Skills"

bgwas

R package to perform Bayesian Genome-Wide Association Studies

bigbookofr

The biggest collection of R books (and maybe later some other resources too)

biology

bipolar_lncrna

Scripts for analyzing and exploring lncRNA in bipolar RNA-Seq data

brain-mets-seer

Reproducibility materials for a study of brain metastases incidence and Medicare claims classification accuracy

brca

brca_ageassociations

Analysis materials for the BC Cancer Research Centre Molecular Oncology group study of age-associated gene expression in breast cancer

breast-cancer

HarvardX: PH125.9x: Data Science - Capstone Breast Cancer Diagnosis Project

cancer_detection

prediction of uterus cancer on a patient ; data mining, random forest, problem of classification, neural network

cancermedicine

circrna

code for two circRNA projects

circrna_paperscripts

circrnapipeline

citn07-ncounter-data-code-results

Reproducible workflow for Figure 5 of Bhardwaj et al Nat Cancer

ckdgen-pheno

CKDGen R4 phenotype preparation script

cldn6

clustering-tcgafivecancertypes

Code to Reproduce results in "Integrate Multi-omic Data Using Affinity Network Fusion (ANF) for Cancer Patient Clustering"

cmapr

Tools for manipulating annotated data matrices

coloc

Repo for the R package coloc