Jian-Guo Zhou's Projects
100-Days-Of-ML-Code中文版
100 Days of ML Coding
Publication Page for Satpathy*, Granja* et al 2019
Mutation calling code for the paper: Radiation Therapy Enhances Immunotherapy Response in Microsatellite-stable Colorectal and Pancreatic Adenocarcinoma in a Phase II Trial
Python package to annotate and visualize gene fusions.
Class material
Annotated data matrices.
Fast and accurate gene fusion detection from RNA-Seq data
将速铂下载工具进行封装,以便高效方便地批量下载SRA测序数据。
ATAC-seq analysis pipelines
ATAC-seq pipeline
ATAC-seq pipeline data analysis from Ciona cardiopharyngeal cells
Analysis scripts for ATAC-seq data
ATACseq tools for Bioconductor
ATAC-seq pipeline
ATAC-seq Tutorial CSHL
Scripts for aligning and processing ATAC-SEQ data and for comparing with mutation BED files
ATAC-seq Quality Control
List of software/websites/databases/other stuff for genome engineering
😎 A curated list of awesome GitHub Profile READMEs 📝
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
count DNA sequence reads in BAM files
Code to reproduce the analyses of "Automated quantification of Barrett's esophagus from non-endoscopic device predicts Barrett's segment length" by Berman et al.
Default Bayesian hypothesis tests for correlation, partial correlation, and mediation
Bladder Cancer Index Caller