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bc_blood_monocytes

Code used to generate figures for "Peripheral blood monocyte abundance predicts outcomes in breast cancer patients"

bcbio-nextgen

Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis

beautiful-visualization-with-r

《R语言数据可视化之美》配套代码

bemkl

Bayesian Efficient Multiple Kernel Learning

bemkl-rbps

Global proteomics profiling improves drug sensitivity prediction: results from a multi-omics, pan-cancer modeling approach

benisse

biobambam2

Tools for early stage alignment file processing

biocpkgtools

Computable build reports, package metadata, and download stats from the Bioconductor project

bioenricher

Integrate Analysis and Visualization for Bioinformatic Enrichment Analyzer

bioinformatics

start bioinformatics learing as a green hand

bioinformatics-resources

A curated list of resources for learning bioinformatics.

biscuit_singlecell_imm_icml_2016

R Codebase for BISCUIT: Infinite Mixture Model to cluster and impute single cells.

blasso

Integrating LASSO and bootstrapping algorithm to find best prognostic or predictive biomarkers

blog

Share my knowledge, share my life.

bmo

BMO - a tool for predicting TF binding from ATAC-seq data

bms038_analysis

Code and additional processed data for manuscript "Tumor and Microenvironment Evolution during Immunotherapy with Nivolumab"; see for manuscript https://doi.org/10.1016/j.cell.2017.09.028 See also http://www.ioexplorer.org for interactive visuallization

bnma

Bayesian network meta analysis R package

book

bracken

Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species in DNA sequences from a metagenomics sample.

brcarepred

breastcancerspatialproteomics

bwa

Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

caas_1

Chromosome arm aneuploidies in cancer

cancer-module-cnv

cancer-module-cnv

cancersubtypesprognosis

Cancer subtypes and prognosis based on multiple transcriptomic data sets

caret

caret (Classification And Regression Training) R package that contains misc functions for training and plotting classification and regression models

carsten_cytof_code

cccexplorer

Paper - Transcriptome analysis of individual stromal cell populations identifies stroma-tumor crosstalk in mouse lung cancer model

ccl-discovery

Source code for our paper: Discovery of Primary Prostate Cancer Biomarkers using Cross-Cancer Learning

ccle_heterogeneity