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uk_biobank_gwas

Overview of the data QC, code, and GWAS summary output from the 2017 UK Biobank data release

uncertaintyrna

This github repository contains code to reproduce the analysis in our paper "Variability in estimated gene expression among commonly used RNA-seq pipelines"

unicycler

hybrid assembly pipeline for bacterial genomes

uvm_ssgsea4tcga

vdjtools

Post-analysis of immune repertoire sequencing data

violin

A simple workaround to produce violin plot with highcharts.js

violinplotter

R package for plotting and comparing means with violin plots

virsorter2

customizable pipeline to identify viral sequences from (meta)genomic data

vis_lab1.5

Vis_Lab1.5

visium_heart

Spatial transcriptomics of heart tissue

wgcna_peri-implantitis

This code is related "Identification of Immunological Bioprocesses Involved in Peri-Implantitis Using Weighted Gene Co-Expression Network Analysis"

wiggleplotr

A small R package to make sequencing read coverage plots in R.

wrangle

data_wrangling

xcell

Cell types enrichment analysis

xgboost

Scalable, Portable and Distributed Gradient Boosting (GBDT, GBRT or GBM) Library, for Python, R, Java, Scala, C++ and more. Runs on single machine, Hadoop, Spark, Dask, Flink and DataFlow

znrf3_2021

Code pertaining to the manuscript "Somatic Driver Mutation Prevalence in 1,844 Prostate Cancers Identifies ZNRF3 Loss as a Predictor of Metastatic Relapse"