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Code for NeuroImage: Clinical paper "Automatic post-stroke lesion segmentation on MR images using 3D residual convolutional neural network."

License: GNU General Public License v3.0

Python 100.00%
3d-resnet ischemic-stroke medical-image-analysis mri pytorch segmentation

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3dmrisegmentation's Issues

helpp

Hi, Hope you will be fine. Iam Research student from Comsats University Islamabad Pakistan. I have read your paper this is very remarkable paper and now iam trying to reproduce this paper for my research
There is issue in your code. When i run train.py it generate separate file for every epoch and there is 1200 epochs which generate 1200 epoch files. so please tell me in testing i have to give path for every single file which is very time consuming . Kindly help me
Capture

Incomplete Code

Hi, Hope you will be fine. Iam Research student from Comsats University Islamabad Pakistan. I have read your paper this is very remarkable paper and now iam trying to reproduce this paper for my research . So when I start this paper I got issue in this file 'train.py ' it look that code is missing in this file because I can't get where I have to put path for dataset. Kindly help me in this problem. To extend your work I need complete code of your paper . It would be great help if you could provide me complete code of your paper .Bundle of thanks in advance. looking forward to your kind response.

question

Thankyou sir.
One more question I want to ask that at training there is 1200 epochs and it will saves only best models but how we can find out which epoch is best. Secondly I want this results shown in figure
Capture1

help

Hi, Hope you will be fine. Iam Research student from Comsats University Islamabad Pakistan. I have read your paper this is very remarkable paper and now iam trying to reproduce this paper for my research . So when I start this paper I got issue in this file 'train.py ' it look that code is missing in this file because I can't get where I have to put path for dataset. Kindly help me in this problem. To extend your work I need complete code of your paper . It would be great help if you could provide me complete code of your paper .Bundle of thanks in advance. looking forward to your kind response.

Pretrained weights

Hi,
Is it possible for you to provide the pretrained weights for the model?
Thank you in advance.

test.py

Hi, Hope you will be fine. Iam Research student from Comsats University Islamabad Pakistan. I have read your paper this is very remarkable paper and now iam trying to reproduce this paper for my research
There is issue in your code. When i run train.py it generate separate file for every epoch and there is 1200 epochs which generate 1200 epoch files. so please tell me in testing i have to give path for every single file which is very time consuming . Kindly help me.

训练效果不好 Poor training effect

Hello, I trained ATLAS R2 using your code python train.py --data_dir <path_to_dataset> --save_dir <path_to_snapshots>, but Dice only has 0.08, Is there any way to improve Dice?

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