wook2014 Goto Github PK

7z

Because 7-zip source code was in a 7z archive [mirror]

abrowse

The Advanced Genome Browser

adapterremoval

AdapterRemoval v2 - rapid adapter trimming, identification, and read merging

adminlte

AdminLTE - Free admin dashboard template based on Bootstrap 4

admixtools

A collection of programs which use genetic data to infer how populations are related to one another

admixture

ADMIXTURE is a software tool for maximum likelihood estimation of individual ancestries from multilocus SNP genotype datasets

afterqc

Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data

aga

Annotated Genome Aligner

agat

Another Gtf/Gff Analysis Toolkit

agc

Assembled Genomes Compressor

ahrd

High throughput protein function annotation with Human Readable Description (HRDs) and Gene Ontology (GO) Terms.

aircrack-ng

WiFi security auditing tools suite

akt

Ancestry and Kinship Tools

akutils-v1.2

akutils with massive updates over v1.1 to functionality and command line interface.

alfalfa

A Long Fragment Aligner called ALFALFA

alfred

BAM Statistics, Feature Counting and Annotation

alicut

A nice tool to cut out ALISCORE identified randomized sequence sections in multiple sequence alignments.

alignparse

Align sequences and then parse features.

aligroove

AliGROOVE, a new tool to visualize the extent of sequence similarity and alignment ambiguity in pairwise sequence comparisons de- rived from a multiple sequence alignment. AliGROOVE can help to detect strongly derived sequences that have the potential to bias tree reconstructions and node support. Using a simple match/mismatch scoring for nucleotide data and a BLOSUM62 scoring matrix for amino acid data ALISCORE uses a Monte Carlo resampling within a sliding window to generate profiles of pairwise sequence similarity for all pairwise sequence comparisons. AliGROOVE summarizes site scores of these profiles normalized over the whole alignment length for each pairwise comparison. The obtained scoring values between sequences are translated into a similarity matrix and thus deliver information on the extent of taxonomically heterogeneous alignment ambiguity or sequence similarity within a multiple sequence alignment.

alitv

Visualize whole genome alignments as linear maps

alitv-perl-interface

allelecount

Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each allele [ACGT] at that location (given any filter settings)

allelefinder

AlleleFinder is a tool for identifying allele genes from polyploid genome.

alphafold

Open source code for AlphaFold.

altanalyze

AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-use precompiled graphical user-interface versions available from our website.

alter

ALignment Transformation EnviRonment

amigo

AmiGO is the public interface for the Gene Ontology.

anbox

Anbox is a container-based approach to boot a full Android system on a regular GNU/Linux system

angsd

Program for analysing NGS data.

angular-cli

CLI tool for Angular