Topic: gisaid Goto Github
Some thing interesting about gisaid
Some thing interesting about gisaid
gisaid,This project tries to give a glimpse of the different variants of SAR-CoV-2 in the world.
User: 3dgiordano
Home Page: https://3dgiordano.github.io/SARS-CoV-2-Variants/
gisaid,This tool can be used to download the samples and metadata from GISAID provided you have an existing account with download privileges.
User: animesh-workplace
gisaid,A selenium spider for GISAID
User: c4-driod
gisaid,Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories
Organization: cdcgov
Home Page: https://cdcgov.github.io/seqsender/
gisaid,A tool to filter the full fasta sequences from GISAID.
User: chainofchaos
gisaid,Assisted download of selected samples from GISAID
Organization: enviro-lab
gisaid,HDR UK - Resources for 🦠COVID-19 Research
Organization: hdruk
gisaid,A pipeline that ingests SARS-CoV-2 (i.e. nCoV) data from GISAID and Genbank, transforms it, stores it on S3, and triggers Nextstrain nCoV rebuilds.
Organization: nextstrain
gisaid,This repo summarises the data sources, web application, tools and reviews paper of SARS-Cov-2. Trace the study progress of SARS-Cov-2 based on GISAID data.
User: qianqli
gisaid,Repository with codes to the paper 'Combining genomic data and infection estimates to characterize the complex dynamics of SARS-CoV-2 Omicron variants in the United States'
User: rafalopespx
Home Page: https://www.medrxiv.org/content/10.1101/2023.11.07.23298178v1
gisaid,Simple Discord bot that scrapes GISAID SARS-CoV-2 variant frequencies
User: thaddad91
gisaid,Access the GISAID Flu database using Python
User: william-swl
Home Page: https://william-swl.github.io/gisflu/
gisaid,Processing GISAID SARS-CoV-2 emerging variants data and generating a language model using Transformers. The model semantically captures masked glycoprotein amino acid mutations in emerging variants of the SARS-CoV2-virus and gives appropriate scores for each potential aa change.
User: zelenkastiot
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