Topic: cancer-evolution Goto Github
Some thing interesting about cancer-evolution
Some thing interesting about cancer-evolution
cancer-evolution,Snakemake pipeline for running PhyloWGS on NIH Biowulf Cluster
User: aleighbrown
cancer-evolution,J-SPACE is a Julia package to simulate the spatial growth and the genomic evolution of a cell population and the experiment of sequencing the genome of the sampled cells.
Organization: bimib-disco
cancer-evolution,
Organization: cancersysbio
cancer-evolution,The evoverse is a package to implement cancer evolution analysis on multi-sample cancer sequecing data.
User: caravagn
cancer-evolution,Datasets and analysis results released with the REVOLVER package for Cancer Evolution.
User: caravagn
cancer-evolution,Supplementary Data released with Caravagna et al. Subclonal reconstruction of tumors by using machine learning and population genetics. Nature Genetics volume 52, 898–907(2020).
User: caravagn
Home Page: https://caravagn.github.io/mobster/
cancer-evolution,Mutation tree from binary bulk sequencing data
User: caravagn
cancer-evolution,Clone trees for Cancer Evolution studies from bulk sequencing data.
Organization: caravagnalab
Home Page: https://caravagnalab.github.io/ctree/
cancer-evolution,REVOLVER - Repeated Evolution in Cancer
Organization: caravagnalab
Home Page: https://caravagnalab.github.io/revolver/
cancer-evolution,Analysis pipleine to model tumour clonal evolution from WGS data (driver annotation, quality control of copy number calls, subclonal and mutational signature deconvolution)
Organization: caravagnalab
cancer-evolution,Personalised mutual hazard networks
Organization: cbg-ethz
Home Page: https://cbg-ethz.github.io/pMHN/
cancer-evolution,Agent-based modelling reveals the impact of growth patterns on spatial and temporal features of clonal diversification. A GitHub repository of the Source Code for the model and Source Data for the figures of the paper.
Organization: franciscrickinstitute
cancer-evolution,Agent-based modelling reveals the impact of growth patterns on spatial and temporal features of clonal diversification. A GitHub repository of the Source Code for the model and Source Data for the figures of the paper.
User: iamfuxiao
cancer-evolution,Bayesian mixture models for estimating and clustering cancer cell fractions
User: keyuan
cancer-evolution,Gillespie simulations of advantageous drivers & deleterious passengers in cancer
Organization: mirnylab
cancer-evolution,Code for "Conditional prediction of consecutive tumor evolution using cancer progression models: What genotype comes next?", J.Diaz-Colunga, R.Diaz-Uriarte: https://doi.org/10.1371/journal.pcbi.1009055
User: rdiaz02
cancer-evolution,Python package for cancer early detection based on a model of cancer evolution and circulating tumor DNA (ctDNA) shedding
Organization: reiterlab
cancer-evolution,Estimates the clonal population structure in a tumour sample given a cell mutation matrix
User: tommakesthings
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