Comments (2)
The error appears during a gaussian filter during the Hough transform and is probably due to weird in plane resolution (due to stretching procedure). No clue to resolve it yet...
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This error will be fixed when using new version of spinal cord detection for PropSeg
from spinalcordtoolbox.
Related Issues (20)
- Indicate versions of `sct_deepseg` models HOT 5
- `Keyword=CombinedLabels` incompatible with `combine=1`
- pytest issue `assert not changed` and how to run in IDE HOT 3
- Custom argparse formatter fails for blank lines in multiline strings HOT 2
- Usage of `sct_label_utils -disc <file>` is unclear
- Project discs orthogonally to the spinal cord segmentation or centerline
- Straightening is not a bijective transformation HOT 25
- viewer syntax at the end does not provide correct output file name HOT 1
- Add postprocessing functionality for the new monai/nnunet models
- qc report to display manual segmentation HOT 6
- Lesion mask not properly overlaid HOT 3
- Dipy denoising functions are duplicated between `sct_maths` and `sct_denoising_onlm`/`sct_dmri_denoise_patch2self`
- Get rid of calls to `inspect.stack` HOT 1
- Input requirements for `-x label` are unclear (what is a "single-voxel label"?) HOT 6
- sct_run_batch does not seem robust to BIDS format HOT 3
- `portalocker` error when running `sct_qc` with a large number of jobs in parallel HOT 7
- Develop new method to register odd and even chunks on 3D volumes HOT 3
- The threshold parameter of `sct_deepseg` doesn't work with the model `seg_sc_contrast_agnostic` for soft segmentation. HOT 8
- Thresholding during image registration
- `RuntimeError: PytorchStreamReader` when running `sct_deepseg` on contrast agnostic model HOT 4
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