Related Issues (20)
- For `sct_analyze_lesion -f`, the atlas ROI spreadsheet columns are unsorted (e.g. 17, 21, 07, 11, etc.)
- model c2c3_disc_models/t2_model.yml does not exist HOT 3
- CI is failing with `pytest`-related import errors during the collection stage HOT 1
- `sct_register_multimodal` is changing the data type when using nearest neighbours interpolation HOT 1
- `sct_analyze_lesion`: add tutorial
- FMRI moco argparse help description refers to non-existent `-p` (should be `-param` instead) HOT 1
- Output ANTs syntax in moco for easier debugging HOT 2
- Suspicious application of a mask in moco HOT 5
- Verbose CLI arg (`sct_apply_transfo -v`) is not passed to the subprocess call to `antsApplyTransforms` HOT 1
- Update SCIseg model to the latest version
- Improve performance of `sct_analyze_lesion -f` by avoiding redundant calls to `np.where` HOT 1
- `matplotlib==3.9.1` no longer installs wheels, instead tries to build on Windows (but fails in CI) HOT 2
- `sct_analyze_lesion` - pandas warnings are mixing with the function output HOT 3
- `sct_analyze_lesion` - sagittal slices are alwayes reported in RPI HOT 1
- Clarify steps for installing SCT onto ComputeCanada Graham (`requirements.txt` conflicts) HOT 10
- `sct_analyze_lesion` crashes if there is no lesion on the midsagittal slice
- `DEPRECATION: Legacy editable install` during `pip install -e .` step of `install_sct` HOT 2
- `sct_analyze_lesion` - add support for spinal levels HOT 1
- `sct_analyze_lesion` - output lesion length and width for the midsagittal slice HOT 1
- `sct_analyze_lesion` - tissue bridges QC - possible improvements HOT 2
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