pulmonarymri / imoco_recon Goto Github PK

From user:
The matlab code is trying to load a “_mrL.cfl” and a “_maps.cfl” file which don’t seem to be part of the sample data. Are these somehow included in the “_imoco.cfl” file?

Add Docker support
New release when Docker support is tested

Consider switching to ISMRMRD format instead of CFL for input data

Hi,

I was checking the code in this repo, and while I am somehow familiar with sigpy and the other libraries being used, I was hoping to find a way to convert raw data exported from the scanner (in my case a Siemens mMR, so files in twix format) to .cfl that I can then import and use with this code.

Do you have any suggestions about this?

Thank you!

Use the ANTs python API for the imoco_py
ANTsPy package
https://antspyx.readthedocs.io/en/latest/?badge=latest#
https://github.com/ANTsX/ANTsPy

pip install antspyx

replace code in imoco_py/sigpy_e/reg.py

Options:
Binder (would support Octave version)

Google CoLaboratory - python only