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bart

BART: Toolbox for Computational Magnetic Resonance Imaging

extreme_mri

Code for Extreme MRI

fb_ute_recon

handson-ml2

A series of Jupyter notebooks that walk you through the fundamentals of Machine Learning and Deep Learning in Python using Scikit-Learn, Keras and TensorFlow 2.

hyperpolarized-mri-toolbox

The goal of this toolbox is to provide open-source research-level and prototyping software tools for hyperpolarized MRI experiments. It is currently based on MATLAB/Octave code, and includes code for designing radiofrequency (RF) pulses, imaging gradients, data reconstruction, and data analysis. doi: 10.5281/zenodo.1198915

imoco_recon

iterative Motion Compensation (iMoCo) reconstruction for MRI. Includes both Matlab and Python implementations. reference doi 10.1002/mrm.27998

matlab-schemer

Apply and save color schemes in MATLAB with ease.

mirtk

The Medical Image Registration ToolKit (MIRTK), the successor of the IRTK, contains common CMake build configuration files, core libraries, and basic command-line tools. Extension packages are hosted by the MIRTK GitHub group at

mirtorch

A PyTorch-powered differentiable image reconstruction/optimization toolbox

mocolor

mri-simulator

MRI simulator for educational purposes written in MATLAB

pulmonary-mri-reconstruction

Tools for reconstructing Pulmonary MRI datasets to manage motion

pydicom

Read, modify and write DICOM files with python code

riesling

Radial Interstices Enable Speedy Low-Volume Imaging

sigpy

Python package for signal processing, with emphasis on iterative methods

tinycs

minimal MATLAB-based compressed sensing MRI toolkit

torchkbnufft

A high-level, easy-to-deploy non-uniform Fast Fourier Transform in PyTorch.

zotero-dark-theme

userChrome.css file for a Zotero dark theme. Suggestions for improvements are welcome.