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ocean_bgc's Issues

Error in building mocsy: multiple definition of "MAIN__"

Hi
I am trying to build MOM6 with ocean_BGC(I want to use COBALT). I have cloned this repository in "src/MOM6/config_src/external/GFDL_ocean_BGC". While building i am facing the following issue:

test_mocsy.o: In function `MAIN__':
/scratch/ds2/km7623/MOM6_BGC/MOM6-examples/build/gnu/ocean_only/repro/../../../../src/MOM6/config_src/external//GFDL_ocean_BGC/examples/test_mocsy.f90:3: multiple definition of `MAIN__'
test_phizero.o:/scratch/ds2/km7623/MOM6_BGC/MOM6-examples/build/gnu/ocean_only/repro/../../../../src/MOM6/config_src/external//GFDL_ocean_BGC/examples/test_phizero.f90:3: first defined here
test_vars.o: In function `MAIN__':
/scratch/ds2/km7623/MOM6_BGC/MOM6-examples/build/gnu/ocean_only/repro/../../../../src/MOM6/config_src/external//GFDL_ocean_BGC/examples/test_vars.f90:3: multiple definition of `MAIN__'
test_phizero.o:/scratch/ds2/km7623/MOM6_BGC/MOM6-examples/build/gnu/ocean_only/repro/../../../../src/MOM6/config_src/external//GFDL_ocean_BGC/examples/test_phizero.f90:3: first defined here
MOM_driver.o: In function `MAIN__':
/scratch/ds2/km7623/MOM6_BGC/MOM6-examples/build/gnu/ocean_only/repro/../../../../src/MOM6/config_src/drivers/solo_driver/MOM_driver.F90:1: multiple definition of `MAIN__'
test_phizero.o:/scratch/ds2/km7623/MOM6_BGC/MOM6-examples/build/gnu/ocean_only/repro/../../../../src/MOM6/config_src/external//GFDL_ocean_BGC/examples/test_phizero.f90:3: first defined here
test_mocsy_buffesm.o: In function `MAIN__':
/scratch/ds2/km7623/MOM6_BGC/MOM6-examples/build/gnu/ocean_only/repro/../../../../src/MOM6/config_src/external//GFDL_ocean_BGC/examples/test_mocsy_buffesm.f90:3: multiple definition of `MAIN__'
test_phizero.o:/scratch/ds2/km7623/MOM6_BGC/MOM6-examples/build/gnu/ocean_only/repro/../../../../src/MOM6/config_src/external//GFDL_ocean_BGC/examples/test_phizero.f90:3: first defined here
test_errors.o: In function `MAIN__':
/scratch/ds2/km7623/MOM6_BGC/MOM6-examples/build/gnu/ocean_only/repro/../../../../src/MOM6/config_src/external//GFDL_ocean_BGC/examples/test_errors.f90:3: multiple definition of `MAIN__'
test_phizero.o:/scratch/ds2/km7623/MOM6_BGC/MOM6-examples/build/gnu/ocean_only/repro/../../../../src/MOM6/config_src/external//GFDL_ocean_BGC/examples/test_phizero.f90:3: first defined here
test_kprime.o: In function `MAIN__':
/scratch/ds2/km7623/MOM6_BGC/MOM6-examples/build/gnu/ocean_only/repro/../../../../src/MOM6/config_src/external//GFDL_ocean_BGC/examples/test_kprime.f90:3: multiple definition of `MAIN__'
test_phizero.o:/scratch/ds2/km7623/MOM6_BGC/MOM6-examples/build/gnu/ocean_only/repro/../../../../src/MOM6/config_src/external//GFDL_ocean_BGC/examples/test_phizero.f90:3: first defined here
test_kzero.o: In function `MAIN__':
/scratch/ds2/km7623/MOM6_BGC/MOM6-examples/build/gnu/ocean_only/repro/../../../../src/MOM6/config_src/external//GFDL_ocean_BGC/examples/test_kzero.f90:3: multiple definition of `MAIN__'
test_phizero.o:/scratch/ds2/km7623/MOM6_BGC/MOM6-examples/build/gnu/ocean_only/repro/../../../../src/MOM6/config_src/external//GFDL_ocean_BGC/examples/test_phizero.f90:3: first defined here
test_derivnum.o: In function `MAIN__':
/scratch/ds2/km7623/MOM6_BGC/MOM6-examples/build/gnu/ocean_only/repro/../../../../src/MOM6/config_src/external//GFDL_ocean_BGC/examples/test_derivnum.f90:3: multiple definition of `MAIN__'
test_phizero.o:/scratch/ds2/km7623/MOM6_BGC/MOM6-examples/build/gnu/ocean_only/repro/../../../../src/MOM6/config_src/external//GFDL_ocean_BGC/examples/test_phizero.f90:3: first defined here
test_buffesm.o: In function `MAIN__':
/scratch/ds2/km7623/MOM6_BGC/MOM6-examples/build/gnu/ocean_only/repro/../../../../src/MOM6/config_src/external//GFDL_ocean_BGC/examples/test_buffesm.f90:3: multiple definition of `MAIN__'
test_phizero.o:/scratch/ds2/km7623/MOM6_BGC/MOM6-examples/build/gnu/ocean_only/repro/../../../../src/MOM6/config_src/external//GFDL_ocean_BGC/examples/test_phizero.f90:3: first defined here
test_derivauto.o: In function `MAIN__':
/scratch/ds2/km7623/MOM6_BGC/MOM6-examples/build/gnu/ocean_only/repro/../../../../src/MOM6/config_src/external//GFDL_ocean_BGC/examples/test_derivauto.f90:3: multiple definition of `MAIN__'
test_phizero.o:/scratch/ds2/km7623/MOM6_BGC/MOM6-examples/build/gnu/ocean_only/repro/../../../../src/MOM6/config_src/external//GFDL_ocean_BGC/examples/test_phizero.f90:3: first defined here
make: *** [Makefile:1402: MOM6] Error 1

The test cases in "mocsy/example" are creating a problem.

Can you help me here?
(using mpiifort,mpiicc)

missing parenthesis in Nitrogen burial fraction

Hello,

We were looking into Nitrogen burial in COBALT and were puzzled by line 7810:

cobalt%frac_burial(i,j) = 0.013 + 0.53*fpoc_btm**2.0/((7.0+fpoc_btm)**2.0) * & cobalt%zt(i,j,k) / (cobalt%z_burial + cobalt%zt(i,j,k))

Is the a missing set of parenthesis in the numerator?

Best,
Sam and Fan

documentation wanted

Users are asking for the code documentation, preferably embeded in the code with doxygen.

We can also think about adding a wiki-like guide.

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