neurogenomics / document_and_share

Strategies for documentation and sharing of data analyses.

document_and_share

Strategies for documentation and sharing of data analyses.

Presentation

• How to share powerpoints

1. File -> Share -> Share...
2. Share via OneDrive.
3. File -> Share -> Copy link
4. Navigate to the link and the click Share button in the upper right for more control over share settings.

Rmarkdown

• Template

• Example

• Plotly vignette

Jupyter

• Template

• Example

  • Animation example

Conda

• Here you can find a yaml file that can be used to construct a conda env (named "pyre") that includes R, Python, and Jupyter, and all the necessary supporting packages.

1. Create conda env

conda env create -f https://github.com/neurogenomics/document_and_share/raw/main/templates/env.yml

2. Add env to Jupyter

python -m ipykernel install --user --name=pyre

3. Activate conda env

conda activate pyre

4. Start Jupyter

jupyter notebook