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Neurogenomics Lab Profile

10x_multiome_anlysis

Simple straightforward overview for 10X multiome (GEX+ATAC) analysis

apoe_microglia

archr

ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)

benchmark_with_epicompare

ENCODE reproducibility check, cutandrun & TIP-seq benchmark

bioc-actions

GitHub Actions for developing and maintaining Bioconductor packages

bioc_mentorship_docs

Training materials for mentors and mentees

biocstyle

Issues and pull requests for BiocStyle should go here.

bsgenome

Software infrastructure for efficient representation of full genomes and their SNPs

cfos_integrative_analysis

chicago_for-radicl-seq

RADICL-seq data tag distance plot

chromexpress

Which epigenetic factors are the best predictors of gene expression? An analysis using ENCODE data.

consensuspeak

cranlogs

Download Logs from the RStudio CRAN Mirror

cut_n_tag

Preprocessing pipeline for CUT&TAG data.

cutntag-benchmarking-analysis

Processing, benchmarking and analysis of CUT&Tag against ENCODE ChIP-seq.

dockerfiles

docker files for dockerhub

document_and_share

Strategies for documentation and sharing of data analyses.

enformercelltyping

Enformer Celltyping is a tensorflow, multi-headed attention based model that incorporates distal effects of Deoxyribonucleic Acid (DNA) interactions to predict histone marks across diverse cell types.

epiarchives

Public archive for EpiCompare reports.

epicompare

Comparison, benchmarking & QC of epigenetic datasets

epiprepare

Preprocessing of epigenomic data from fastq files.

ewce

ewcedata

gchromvar

Cell type specific enrichments using finemapped variants and quantitative epigenetic data

genomicfiles

Distributed computing by file or by range

genomicranges

Representation and manipulation of genomic intervals

google-docs-bibtex-cite

This is what you have waited for: use BibTeX citations in Google Docs

gpt_hpo_annotations

🏥🧑‍⚕️✨🤖✨👨‍⚕️🏥

hierarchicell

An R package for simulating cell-type specific and hierarchical single-cell expression data