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Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2

License: Apache License 2.0

Shell 3.43% C++ 0.13% Python 91.65% C 0.02% Cuda 0.71% Jupyter Notebook 3.90% Dockerfile 0.16%

openfold's Introduction

Hello, Hello! ๐Ÿ‘จโ€๐Ÿ’ป

Science!

My name is Jonathan and I am an entering Bioengineering graduate student at UCLA! In a past life (undergrad), I studied a Computer Science and Computational Biology. I'm looking to apply my knowledge of ML and stats to my bioengineering research. Some current projects include:

  • Early bacteria biofilm formation in Vibrio cholera
  • Peptide-membrane interactions via small-angle X-ray scattering (SAXS)
  • Using transfomer-based embeddings of amino acid sequences to study peptide families

  • ๐Ÿ”ญ Iโ€™m currently working on peptides and bacteria!
  • ๐ŸŒฑ Iโ€™m currently learning transformers and Julia.
  • ๐Ÿ’ฌ Ask me about my ever growing love for JuliaLang.

openfold's People

Contributors

alquraishi avatar brianloyal avatar cclauss avatar decarboxy avatar ericmjl avatar gahdritz avatar josemduarte avatar kiddozhu avatar lhatsk avatar lilleswing avatar marta-sd avatar sachinkadyan7 avatar sdvillal avatar yuzhiguo07 avatar

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