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Hello, Hello! 👨‍💻

Science!

My name is Jonathan and I am an entering Bioengineering graduate student at UCLA! In a past life (undergrad), I studied a Computer Science and Computational Biology. I'm looking to apply my knowledge of ML and stats to my bioengineering research. Some current projects include:

  • Early bacteria biofilm formation in Vibrio cholera
  • Peptide-membrane interactions via small-angle X-ray scattering (SAXS)
  • Using transfomer-based embeddings of amino acid sequences to study peptide families

  • 🔭 I’m currently working on peptides and bacteria!
  • 🌱 I’m currently learning transformers and Julia.
  • 💬 Ask me about my ever growing love for JuliaLang.

Jonathan Chen's Projects

himalaya.jl icon himalaya.jl

🏔🔍 SAXS diffraction pattern indexing the easy way

openfold icon openfold

Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2

parquet.jl icon parquet.jl

Julia implementation of Parquet columnar file format reader

t-vae icon t-vae

Transformer Variational Autoencoder experiment

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