Comments (3)
I was able to overcome this issue by adding the line:
#include <limits>
to the file hap.py/src/c++/lib/tools/Roc.cpp
from hap.py.
Hi did anyone came across this issue or had the chance to look at the error. Just wandering as I'm working with truvari
as well but the tool cannot accurately detect SNPs, only SVs.
Thanks, let me know.
from hap.py.
Hi,
I am encountering some issues that I am still trying to troubleshoot. I found using the Docker image somewhat helpful, but I still encountered problems and I am returning to see if I can understand the installation issues better (before checking if there is a formatting error when using the Docker image).
Based upon general experience when using cmake
, I changed the command as follows:
Current (as of 8/2/2023): cmake ../hap.py
Used: cmake ..
Again, there are other issues that I am still trying to troubleshoot, and I hope that you can receive a response from Illumina staff (I am a user, not an Illumina developer). You are also seeing a different set of error messages than I saw before making that change.
However, I hope sharing my experiences can be somewhat helpful, for at least some users?
Sincerely,
Charles
from hap.py.
Related Issues (20)
- WES TI TV ratio HOT 2
- Confused with the interpretation when having TRUTH.FN and QUERY.FP HOT 2
- pre.py -> vcfcheck fails due to call with invalid genotype (non-existent allele)
- Parsing results VCF gives different counts of TRUTH FN than summary HOT 1
- CMake Error at CMakeLists.txt:32 (message): Building external dependencies has failed
- Error running BCFTOOLS :Argument list too long
- Integrating vcfdist as a comparison engine into hap.py
- missing reference HOT 1
- VCF format issues with --write-vcf, - FORMAT field inconsistencies HOT 1
- Trying to print sequence when we mean contig name
- error code 1
- Docker Implementation: Several Error Messages Related to "preprocess" HOT 1
- ROC and PR curve HOT 2
- Docker fails to build for both bases
- Incorrect number of FORMAT/AD values on scmp-distance engine
- Link provide in email is broken HOT 1
- [E::bgzf_uncompress] inflate failed: invalid distance too far back HOT 1
- Docker build failed
- How is the false positive rate calculated in som.py stats?
- Can't find reference
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from hap.py.