Comments (1)
Dear Author,
I am currently facing a similar issue to the one you described regarding the missing contig definitions in the VCF file header. I have attempted to follow the usual steps, but the problem persists, and I keep encountering warnings and errors related to undefined contigs.
I came across your solution on this matter and was wondering if you could kindly share the detailed steps you took to resolve this issue. Your expertise and guidance would be immensely helpful to me in overcoming this challenge.
Thank you very much for your time and assistance.
Best regards,
from hap.py.
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