Comments (2)
solivehong
commented on July 22, 2024
I answered my own question
I searched for a new and suitable version of the sample HG001 agilent exome
and used giab vcf
used bedtools compare agilent bed and benchmark bed to take overlap
The results are great and meet my expectations
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solivehong
commented on July 22, 2024
Do I have a problem doing this
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Related Issues (20)
- Confused with the interpretation when having TRUTH.FN and QUERY.FP HOT 2
- pre.py -> vcfcheck fails due to call with invalid genotype (non-existent allele)
- Parsing results VCF gives different counts of TRUTH FN than summary HOT 1
- CMake Error at CMakeLists.txt:32 (message): Building external dependencies has failed
- Error running BCFTOOLS :Argument list too long
- Integrating vcfdist as a comparison engine into hap.py
- missing reference HOT 1
- VCF format issues with --write-vcf, - FORMAT field inconsistencies HOT 1
- Trying to print sequence when we mean contig name
- error code 1
- Docker Implementation: Several Error Messages Related to "preprocess" HOT 1
- ROC and PR curve HOT 2
- Docker fails to build for both bases
- Incorrect number of FORMAT/AD values on scmp-distance engine
- Link provide in email is broken HOT 1
- [E::bgzf_uncompress] inflate failed: invalid distance too far back HOT 1
- Docker build failed
- How is the false positive rate calculated in som.py stats?
- Can't find reference HOT 1
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