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Hammer Lab's Projects

sbt-base.g8 icon sbt-base.g8

giter8 template for hammerlab projects using the hammerlab/sbt-parent `base` plugin

sbt-compat icon sbt-compat

An sbt plugin that backports parts of sbt 1's public API on top of sbt 0.13 implementation

sbt-parent icon sbt-parent

SBT plugins for publishing to Maven Central, shading and managing dependencies, reporting to Coveralls from TravisCI, and more

scikit-bio icon scikit-bio

scikit-bio is an open-source, BSD-licensed, Python package providing data structures, algorithms, and educational resources for bioinformatics.

seltest icon seltest

The simple, fast, visual testing framework for web applications.

slim icon slim

Node server that listens to Spark events, aggregates statistics, and writes them to Mongo

smartcount icon smartcount

Repository for collaboration on Celldom computer vision solutions

sosa icon sosa

The Sane OCaml String API

spark-genomics icon spark-genomics

Aggregation of various hammerlab-org genomic, spark, and scala libraries

spark-json-relay icon spark-json-relay

SparkListener that converts SparkListenerEvents to JSON and forwards them to an external service via RPC.

spark-util icon spark-util

low-level helpers for Apache Spark libraries and tests

spear icon spear

WIP: SparkListener that maintains info about jobs, stages, tasks, executors, and RDDs in MongoDB.

spheroid icon spheroid

Training data, models, and analysis for 3D culture cytotoxicity assays with microscopy

spree icon spree

Live-updating Spark UI built with Meteor

stanity icon stanity

python convenience functions for working with Stan models (via pystan)

stratocumulus icon stratocumulus

DEPRECATED: we don't really maintain this any more, we use Coclobas:

stratotemplate icon stratotemplate

DEPRECATED: we don't really maintain this any more, we use Coclobas:

suffix-arrays icon suffix-arrays

Spark-based implementation of pDC3, a linear-time parallel suffix-array-construction algorithm

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