hammerlab Goto Github PK
Name: Hammer Lab
Type: Organization
Bio: We're a lab working to understand and improve the immune response to cancer
Location: Charleston, SC
Blog: http://hammerlab.org
Hammer Lab's Projects
infino
Infino: a Bayesian hierarchical model improves estimates of immune infiltration into tumor microenvironment
infino-docker
Development environment for infino.
invis
A tool for exploring high-dimensional RNA sequences from in vitro selection
io-utils
Libraries for console/file I/O, processing/formatting sizes in bytes, etc.
iterators
Enrichment-methods for Scala collections (Iterators, Iterables, Arrays)
keredofi
Ketrew-Related DockerFiles (contents of this repo are software-generated)
kerseq
Helpers for sequence prediction with Keras
ketrew
Keep Track of Experimental Workflows
kubeface
python parallel map on kubernetes
magic-rdds
Miscellaneous functionality for manipulating Apache Spark RDDs.
math-utils
Math and statistics utilities
melanoma-reanalysis
Online Materials: Somatic Mutations, Neoepitope Homology and Inflammation in Melanomas Treated with CTLA-4 Blockade
mhcflurry-icml-compbio-2016
Data and analysis notebooks for Predicting Peptide-MHC Binding Affinities With Imputed Training Data
multi-omic-urothelial-anti-pdl1
Contribution of systemic and somatic factors to clinical response and resistance in urothelial cancer: an exploratory multi-omic analysis
ngsdiagnostics
Diagnostic Scripts for an NGS Pipeline
nosoi
Exploration of evolutionary signatures within viral proteomes by making use of MHC binding predictions
ogene
Type-safe scripts for genomic file wrangling
opentrons
Python API for writing protocols and running them on Opentrons robots
pageant
Parallel Genomic Analysis Toolkit
paper-aocs-chemo-neoantigens
Manuscript on chemotherapy-induced neoantigens in samples from the Australian Ovarian Cancer Study
path-utils
Scala convenience-wrapper for java.nio.file.Path
pileup.js
Interactive in-browser track viewer
ppx_deriving_cmdliner
Ppx_deriving plugin for generating command line interfaces from types (Cmdliner.Term.t)
prohlatype
Probabilistic HLA typing
pygdc
Python API for Genomic Data Commons
pysigs
Mutational signature deconvolution onto known signatures
quince
Scalable genome variant analytics using the ADAM project
quinine
A refreshing treatment for all quality control ailments. Apache 2 licensed.
redaw
Reinvent the Dataset Wheel
rinfino
R client to run infino (http://github.com/hammerlab/infino)
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