fhidalgor / mutagenesis_visualization Goto Github PK

cool package, love the visualization

I am using the heatmap to visualize variant frequencies (and not enrichment scores). While I can recenter the colormap by using colorbar_scale=(lower, upper) I noticed that the colormap is centered around the mean (i.e. (lower+upper)/2). Thius distorts the colormap. Since I am looking at frequencies, I want a linear colorscale between lower and upper. How to do that?

i.e. it should be:
upper = 1e-3
middle=1e-4
lower=1e-5

Hi!
I was checking out this software for some mutagenesis analysis (awesome package by the way), and I tried to do plot a mutagenesis heatmap with the plotly integration (https://mutagenesis-visualization.readthedocs.io/en/latest/doc5_plotly.html#heatmap). I just wanted to let you know that the documentation says hras_rbd.plotly_heatmap(..., when I found that hras_rbd.heatmap_plotly(... actual works.

Add kwarg parameters figsize_x and figsize_y to tune those properties.

object.roc(df[['Variant', 'Class']]) works but object.roc(df) does not.

The description of output_file says add name of file without suffix but the example has the .xlsx suffix. Also .csv did not work for me?
https://mutagenesis-visualization.readthedocs.io/en/latest/api.html?highlight=count_read#mutagenesis_visualization.count_reads