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Alexander Goncearenco's Projects

ai_notes icon ai_notes

machine learning/artificial intelligence notes

biof509 icon biof509

Course materials for the BIOF509 course on Machine Learning and Object Oriented Programming with Python

biovec icon biovec

A new approach for representing biological sequences

continuous_analysis icon continuous_analysis

Computational reproducibility using Continuous Integration to produce verifiable end-to-end runs of scientific analysis.

cruzdb icon cruzdb

python access to UCSC genomes database

data-science-ipython-notebooks icon data-science-ipython-notebooks

Data science Python notebooks: Deep learning (TensorFlow, Theano, Caffe, Keras), scikit-learn, Kaggle, big data (Spark, Hadoop MapReduce, HDFS), matplotlib, pandas, NumPy, SciPy, Python essentials, AWS, and various command lines.

deepexplain icon deepexplain

A unified framework of perturbation and gradient-based attribution methods for Deep Neural Networks interpretability. DeepExplain also includes support for Shapley Values sampling. (ICLR 2018)

elementary-functions icon elementary-functions

Online Supplementary Materials and scripts for the Physical Biology paper on proteins and their elementary functions

enolase icon enolase

Elementary functions in Enolase enzyme superfamily

freesasa icon freesasa

C-library for calculating Solvent Accessible Surface Areas

glexox icon glexox

Automatically exported from code.google.com/p/glexox

graph2vec icon graph2vec

A parallel implementation of "graph2vec: Learning Distributed Representations of Graphs" (MLGWorkshop 2017).

iir icon iir

Machine Learning / Natural Language Processing / Information Retrieval

int3dinterfaces icon int3dinterfaces

Pipeline to extract protein interfaces from Interactome3d structures

kan icon kan

An implementation of Knowledge-aware attention networks (KAN) for protein-protein extraction task

machine-learning icon machine-learning

:earth_americas: machine learning algorithms tutorials (mainly in Python3)

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