Originally reported by Reece Hart (Bitbucket: reece, GitHub: reece) in biocommons/uta #155
Migrated by bitbucket-issue-migration on 2016-09-09 15:15:07
The goal is a minimal api via views for the purposes of providing data to hgvs. At the same time, consider whether a schema overhaul is warranted.
areas:
gene info: gene, aliases, description
sequence info:
transcript: ac, cds_se, exons_se
alignment: tx_ac, alt_ac, strand, method, exons, bounds, cigars
aligned exons: tx_ac,alt_ac,strand,method,ord,cigar,sequences
How to handle multiple alignments of tx to alt sequence?
Rel: multiple alignments to multiple alts (e.g., PAR and paralogs)
Links
- imported from: CORE-155 (Invitae access required)