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Limbus Medical Technologies's Projects

bcbio-nextgen-1 icon bcbio-nextgen-1

Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis

biojava icon biojava

:book::microscope::coffee: BioJava is an open-source project dedicated to providing a Java framework for processing biological data.

black icon black

The uncompromising Python code formatter

c4-plantuml icon c4-plantuml

C4-PlantUML combines the benefits of PlantUML and the C4 model for providing a simple way of describing and communicate software architectures

cheatsheetseries icon cheatsheetseries

The OWASP Cheat Sheet Series was created to provide a concise collection of high value information on specific application security topics.

chromosomemappings icon chromosomemappings

This repository contains chromosome/contig name mappings between UCSC <-> Ensembl <-> Gencode for a variety of genomes.

cloudbiolinux icon cloudbiolinux

CloudBioLinux: configure virtual (or real) machines with tools for biological analyses

country-codes icon country-codes

Comprehensive country code information, including ISO 3166 codes, ITU dialing codes, ISO 4217 currency codes, and many others

gatk-1 icon gatk-1

Official code repository for GATK versions 4 and up

gitflow icon gitflow

Git extensions to provide high-level repository operations for Vincent Driessen's branching model.

hgvs icon hgvs

Python library to parse, format, validate, normalize, and map sequence variants. `pip install hgvs`

hts-specs icon hts-specs

Specifications of SAM/BAM and related high-throughput sequencing file formats

htsjdk icon htsjdk

A Java API for high-throughput sequencing data (HTS) formats.

iem icon iem

Configuration files for the Illumina Experiment Manager

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