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3d-dna

3D de novo assembly (3D DNA) pipeline

adv-r

Advanced R: a book

agentgpt

🤖 Assemble, configure, and deploy autonomous AI Agents in your browser.

alphafold2

To eventually become an unofficial Pytorch implementation / replication of Alphafold2, as details of the architecture get released

anaconda-issues

Anaconda issue tracking

annotsv

Annotation and Ranking of Structural Variation

arrow

Apache Arrow is a multi-language toolbox for accelerated data interchange and in-memory processing

atac-seq

atac-seq-pipeline

ENCODE ATAC-seq pipeline

atlas

ATLAS - Three commands to start analyzing your metagenome data

atom

:atom: The hackable text editor

aucell

AUCell: score single cells with gene regulatory networks

automa.jl

A julia code generator for regular expressions

awk

The AWK Programming Language (AWK 程序设计语言, awkbook) 中文翻译, LaTeX 排版

bam-readcount

count DNA sequence reads in BAM files

bam2fastq

Simple convertor from bam to FASTQ

bamtools

C++ API & command-line toolkit for working with BAM data

bcftools

This is the official development repository for BCFtools. See installation instructions and other documentation here http://samtools.github.io/bcftools/howtos/install.html

bibliometrix

An R-tool for comprehensive science mapping analysis. A package for quantitative research in scientometrics and bibliometrics.

bigdatascript

BigDataScript: Scirpting language for big data

bioalignments.jl

Sequence alignment tools

bioawk

BWK awk modified for biological data

biobambam

Tools for bam file processing

bioconda-utils

Utilities for building and managing bioconda recipes

bioconvert

Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.

biocore.jl

Core types and interfaces for BioJulia packages

bioenricher

Integrate Analysis and Visualization for Bioinformatic Enrichment Analyzer

biogenerics.jl

Generic methods, types and modules for the BioJulia ecosystem.

bioinfokit

Bioinformatics data analysis and visualization toolkit

bioinformatics

Tools for bioinformatics moved to http://git.genenetwork.org/pjotrp/bioinformatics