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ohmyzsh

🙃 A delightful community-driven (with 1800+ contributors) framework for managing your zsh configuration. Includes nearly 300 optional plugins (rails, git, OSX, hub, docker, homebrew, node, php, python, etc), over 140 themes to spice up your morning, and an auto-update tool so that makes it easy to keep up with the latest updates from the community.

olinkrpackage

Olink R package

openai-cookbook

Examples and guides for using the OpenAI API

openapi-specification

The OpenAPI Specification Repository

p5-devel-iperl

:microscope::books: Perl5 language kernel for Jupyter <http://jupyter.org/>

p6-jupyter-kernel

Perl 6 Kernel for Jupyter/IPython notebooks

paga

Mapping out the coarse-grained connectivity structures of complex manifolds.

palantir

Single cell trajectory detection

pandas

Flexible and powerful data analysis / manipulation library for Python, providing labeled data structures similar to R data.frame objects, statistical functions, and much more

pathpicker

PathPicker accepts a wide range of input -- output from git commands, grep results, searches -- pretty much anything.After parsing the input, PathPicker presents you with a nice UI to select which files you're interested in. After that you can open them in your favorite editor or execute arbitrary commands.

pdx-analysis-workflows

picard

A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.

pipe

🎷 B3log 分布式社区的 Go 博客端节点系统，欢迎加入下一代社区网络。B3log distributed community blog-end node based on Go, welcome to join the next generation community network.

pkgbuild

Find tools needed to build R packages

platinumgenomes

The Platinum Genomes Truthset

plink2r

Read PLINK BED/BIM/FAM files into R

plotnine

A grammar of graphics for Python

plotnine-examples

Jupyter Notebooks that are part of the plotnine documentation

plots.jl

Powerful convenience for Julia visualizations and data analysis

prepareaa

A quickstart tool for AmpliconArchitect. Performs all preliminary steps (alignment, CNV calling, seed interval detection) required prior to running AmpliconArchitect.

prody

A Python Package for Protein Dynamics Analysis

prokka

:zap: :aquarius: Rapid prokaryotic genome annotation

protein

:egg: An Android App for Dribbble

protein-science

A collection of useful tutorials for Protein Science

proteostorm

ProteoStorm: An Ultrafast Metaproteomics Database Search Framework

pryr

Pry open the covers of R

public-apis

A collective list of free APIs

pyjulia

python interface to julia

pymol-script-repo

Collected scripts for Pymol

pysam

Pysam is a Python module for reading and manipulating SAM/BAM/VCF/BCF files. It's a lightweight wrapper of the htslib C-API, the same one that powers samtools, bcftools, and tabix.