wrightrc / viva

Visualizing Variation in the Arabidopsis 1001 genomes project

ViVa: Visualizing Variation in the Arabidopsis thaliana 1001 genomes project

This app provides an interface to examine the natural variation of specified genes of interest in the 1001 Genomes project dataset.

It is currently hosted at http://bser2.bse.vt.edu:3838/ViVa/. Email wrightrc(at)vt.edu if it is down or if you run into any issues. The application is also available as a docker container at https://hub.docker.com/repository/docker/wrightrc/viva/general.

The application is further described in the following publication and if you use it please cite the below: Accelerating structure-function mapping using the ViVa webtool to mine natural variation by Morgan O. Hamm, Britney L. Moss, Alexander R. Leydon, Hardik P. Gala, Amy Lanctot, Román Ramos, Hannah Klaeser, Andrew C. Lemmex, Mollye L. Zahler, Jennifer L. Nemhauser, R. Clay Wright First published: 26 July 2019 https://doi.org/10.1002/pld3.147