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1001genomes

2020-04-15-thegarden

alignfigr

Create sequence alignment figures in R

anglimmodifiedprojecttemplate

A few customisations to the default configuration of ProjectTemplate that I use when starting a new analysis project (see http://projecttemplate.net/ for information about the package)

bioc_docker

Docker containers for Bioconductor

bioprocess-book

bse3144

Engineering Analysis for Biological Systems

bsgenome.gmax.ensemblplants.gmv2

This package has the full genome sequences for Glycine max as provided by EnsemblPlants, and it intends to facilitate the data analysis for G. max by making its full genome sequences available through BSgenome.

flowtime

Annotation and analysis of time-lapse and steady-state flow cytometry data

generate-exam

R markdown for generating a formatted exam from a csv of questions

interactive-intro-to-bse

BSE2004 interactive textbook

interactivebse

LearnR chapters for Interactive Introduction to BSE textbook

intro_to_r_rstudio_and_anova

An introduction to R, RStudio, ANOVA, and ggplot2 with examples from Brady et al. Reassess the t Test: Interact with All Your Data via ANOVA, 2015. To view download the Intro_to_R_RStudio_ANOVA.docx file below.

intro_to_r_rstudio_and_ggplot

An introduction to R, RStudio, ggplot2, and time course flow cytometry data analysis. To view download the Intro_to_R.docx file below.

jupyter-docker-pymol

Container-based installation of pymol, with interaction through the browser via Jupyter notebook

land-designations-shinyapp

R Shiny application for interactive data visualization of land designations that contribute to conservation in B.C.

mathjax-siunitx

MathJax extension that emulates the great LaTeX package `siunitx` by Joseph Wright

profiles-templates

psb-assemblytron

The Wright Plant Synthetic Biology Lab private AssemblyTron repository

r-novice-gapminder

Introduction to R for non-programmers using gapminder data.

r1001genomes

Shiny app and R package to facilitate exploration of the 1001 genomes dataset

rcw-cv

A simple LaTeX academic CV template

rocker

R configurations for Docker

shell-novice

The Unix Shell

sortable

R htmlwidget for Sortable.js

statistical-learning

Lecture Slides and R Sessions for Trevor Hastie and Rob Tibshinari's "Statistical Learning" Stanford course

vdh-covid-data

Shiny App of VDH Covid-19 age group data

viva

Visualizing Variation in the Arabidopsis 1001 genomes project

viva-paper

vt_cetl_rmarkdown