viennarna / veenext

Nextstrain community build 'Molecular epidemiology of Venezuelan equine encephalitis complex viruses'

VEEnext: Molecular epidemiology of Venezuelan equine encephalitis (VEE) complex viruses

Michael T. Wolfinger^1,2, Adriano de Bernardi Schneider³

_{¹Department of Theoretical Chemistry, University of Vienna, Vienna, Austria
²Research Group Bioinformatics and Computational Biology, Faculty of Computer Science, University of Vienna, Vienna, Austria}
^{3Genomics Institute, University of California, Santa Cruz, Santa Cruz, CA, United States}

This repository contains a nextstrain community build of the Venezuelan equine encephalitis (VEE) serocomplex viruses that is accessible here. Alternatively, you can drag & drop the VEE.json file directly at auspice.us.

Data in this community build rely on publicly available VEE genomes from NCBI Genbank. New releases are published on an irregular basis when a reasonable amount of novel sequences are available.

Automated lineage designations were performed by using AUTOLIN under default settings.

Citation

We're currently preparing the VEEnext manuscript:

Molecular epidemiology of Venezuelan equine encephalitis complex viruses
Adriano de Bernardi Schneider and Michael T. Wolfinger
2023 (Manuscript in preparation)

If you use data provided in this repository in your own work please link back to this site - Thank you!