bvs-allcaps's Introduction

USCbiostats

Name	Description
AnnoQR	R client wrap for AnnoQ API (https://github.com/blueOwl/AnnoQR)
aphylo	Statistical inference of genetic functions in phylogenetic trees
bayesnetworks	C++ program to fit Bayesian networks, illustrated with simulated data
BinaryDosage	Converts VCF files to a binary format
causnet	What the Package Does (One Line, Title Case)
fdrci	Permutation-Based FDR Point and Confidence Interval Estimation
fmcmc	A friendly MCMC framework
GxEScanR	R version of GxEScan
HiLDA	An R package for inferring the mutational exposures difference between groups
hJAM	hJAM is a hierarchical model which unifies the framework of Mendelian Randomization and Transcriptome-wide association studies.
iMutSig	A web application to identify the most similar mutational signature using shiny
jsPhyloSVG	htmlwidgets for the jsPhyloSVG JavaScript library
LUCIDus	Latent and Unknown Cluster Analysis using Integrated Data
MergeBinaryDosage	R package for merging binary dosage files
partition	A fast and flexible framework for agglomerative partitioning in R
pfamscanr	An R client for EMBL-EBI’s PfamScan API
polygons	Flexible functions for computing polygons coordinates in R
rphyloxml	Read and write phyloXML files in R
selectKSigs	Selection of K in finding the number of mutational signatures
slurmR	slurmR: A Lightweight Wrapper for Slurm
xrnet	R Package for Hierarchical Regularized Regression to Incorporate External Data
xtune	An R package for Lasso and Ridge Regression with differential penalization based on prior knowledge

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