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USCbiostats

Name Description
AnnoQR R client wrap for AnnoQ API (https://github.com/blueOwl/AnnoQR) CRAN status CRAN downloads status
aphylo Statistical inference of genetic functions in phylogenetic trees CRAN status CRAN downloads status
bayesnetworks C++ program to fit Bayesian networks, illustrated with simulated data CRAN status CRAN downloads status
BinaryDosage Converts VCF files to a binary format CRAN status CRAN downloads status
causnet What the Package Does (One Line, Title Case) CRAN status CRAN downloads status
fdrci Permutation-Based FDR Point and Confidence Interval Estimation CRAN status CRAN downloads status
fmcmc A friendly MCMC framework CRAN status CRAN downloads status
GxEScanR R version of GxEScan CRAN status CRAN downloads status
HiLDA An R package for inferring the mutational exposures difference between groups
hJAM hJAM is a hierarchical model which unifies the framework of Mendelian Randomization and Transcriptome-wide association studies. CRAN status CRAN downloads status
iMutSig A web application to identify the most similar mutational signature using shiny CRAN status CRAN downloads status
jsPhyloSVG htmlwidgets for the jsPhyloSVG JavaScript library CRAN status CRAN downloads status
LUCIDus Latent and Unknown Cluster Analysis using Integrated Data CRAN status CRAN downloads status
MergeBinaryDosage R package for merging binary dosage files CRAN status CRAN downloads status
partition A fast and flexible framework for agglomerative partitioning in R CRAN status CRAN downloads status
pfamscanr An R client for EMBL-EBI’s PfamScan API CRAN status CRAN downloads status
polygons Flexible functions for computing polygons coordinates in R CRAN status CRAN downloads status
rphyloxml Read and write phyloXML files in R CRAN status CRAN downloads status
selectKSigs Selection of K in finding the number of mutational signatures
slurmR slurmR: A Lightweight Wrapper for Slurm CRAN status CRAN downloads status
xrnet R Package for Hierarchical Regularized Regression to Incorporate External Data CRAN status CRAN downloads status
xtune An R package for Lasso and Ridge Regression with differential penalization based on prior knowledge CRAN status CRAN downloads status

USC Division of Biostatistics's Projects

.github icon .github

Will contain details for our organization's landing page

acdc icon acdc

Association of covariance to detect differential co-expression

aphylo icon aphylo

Statistical inference of genetic functions in phylogenetic trees

aws-notes icon aws-notes

Random notes on how to use AWS for our research

badges icon badges

Badges for USC's Biostats repositories

barry icon barry

barry: Your go-to motif accountant

bayesnetworks icon bayesnetworks

C++ program to fit Bayesian networks, illustrated with simulated data from P3 of our IMAGE grant application

bedslider icon bedslider

Calculate metrics in a sliding fashion over .bed files

bhrm icon bhrm

An R function for mixtures analysis in environmental epidemiology.

causnet icon causnet

Find globally optimal causal network

cexport icon cexport

What the Package Does (One Line, Title Case)

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