Similarity metrics for peptide epitopes
A typical use case is to search for peptides similar to an epitope.
Proteome-wide census of peptide overlaps and similarities for epitope screens
To create a database of peptide overlaps on some made-up sequences, run
docker run -v $PWD:/local_folder pepidist reference
A file named reference_peptidome.tsv
should show up in your local directory.
Epitopes derived from sequences in a query FASTA file can be checked for similarity to the reference proteome.