szabogtamas Goto Github PK
Type: User
szabogtamas's Projects
aneuploidy_container
cancergenominer
Functions facilitating download and analysis of cancer genomics data from databases like TCGA or CCLE.
codon_usage
Explore codon frequencies in individual genes of a given reference genome.
commonnfnodes
A collection of common computational biology tools wrapped in a "Pythonized" NextFlow nodes.
commonr
R scripts and functions commonly used in personal analysis pipelines.
containerized_metabolomics
Docker container with customised selection of tools to support metabolomics analysis
distance_metrics_comparisons
encode_explore
epidemiology_toolkit
epitope_spotter
Toying around with epitope selection from a given protein based on MHC binding, posttranslational modifications and sequence homology
explorer
introspect
Shortcuts to inspect features of Python functions from within.
jupy_rocker
A Rocker RStudio image supercharged with Jupyter lab
pepidist
Proteome-wide census of peptide overlaps and similarities for epitope screens
python_assisted_drawings
An experimental repo implementing a primitive, CAD-like tool
repertoireseq_container
A docker container with tools to help analyze Immune Repertoire from RNAseq
textemplates
Modular templates to build LaTeX reports with Python and Jinja2
transcript_profiler
Tools that help profiling tissue expression, common mutations, PTMs, regulatory motifs and other features of biological sequences.
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