[Workshop at ABRF 2016 SW2] (https://conf.abrf.org/sw2-galaxy-platform-accessible-core-laboratory-solution-proteogenomic-analysis-and-informatics)
(SW2) The Galaxy Platform as an Accessible, Core Laboratory Solution for Proteogenomic Analysis and Informatics Sunday, April 22, 2018 (8:00am-12:00pm)
Organizers: Pratik Jagtap and Tim Griffin, University of Minnesota
Instructors: Tim Griffin, Pratik Jagtap and Praveen Kumar
This workshop
Workshop goals:
- Introduce the Galaxy framework as a solution for data analysis across ‘omics’ domains
- Provide hands-on experience to attendees in using Galaxy
- Demonstrate use of Galaxy for a proteogenomic analysis (RNA-seq and proteomic integrative analysis)
- Lay the foundation for attendees to implement Galaxy at their own facility or institution to meet ‘omics’ data analysis needs (either specific to one domain or for multi-omics)
Workshop Schedule: Saturday February 20, 2016
- 8:00am-8:15am Introduction to Galaxy Platform and multi-omic studies. (Pratik Jagtap)
- 8:15am-9:15am RNASeq Data Processing: Data Analysis using Galaxy platform. (Praveen Kumar)
- 9:15 am – 10:00 am Hands-on session for proteomics data analysis using Galaxy. (Tim Griffin)
- 10:00 am – 10:30 am Morning Refreshment Break
- 10:30am – 12:00pm Identification of novel proteoforms and visualization. (Pratik Jagtap)
- 12:00pm – 1:00pm Lunch
Workshop materials:
- Workshop documentation
- Slides