galaxyproteomics / abrf2016

Workshop at ABRF 2016 SW4: The Galaxy Platform for Multi-Omic Data Analysis and Informatics

abrf2016

[Workshop at ABRF 2016 SW4] (https://conf.abrf.org/the-galaxy-platform)

The Galaxy Platform for Multi-Omic Data Analysis and Informatics

Organizers: Pratik Jagtap and Tim Griffin, University of Minnesota

Instructors: Tim Griffin, Dave Clements, Candace Guerrero, Getiria Onsongo and Pratik Jagtap

The workshop material includes a basic introduction to Galaxy framework and its use for ‘omics’ data analysis.

Workshop goals:

• Introduce the Galaxy framework as a solution for data analysis across ‘omics’ domains
• Provide hands-on experience to attendees in using Galaxy
• Demonstrate use of Galaxy for a proteogenomic analysis (RNA-seq and proteomic integrative analysis)
• Lay the foundation for attendees to implement Galaxy at their own facility or institution to meet ‘omics’ data analysis needs (either specific to one domain or for multi-omics)

Workshop Schedule: Saturday February 20, 2016

• 8:00am-8:30am Introduction to Galaxy Platform and multi-omic studies. (Tim Griffin)
• 8:30am-10:00am Galaxy Tutorial – Basics of Data Analysis using Galaxy platform. (Dave Clements)
• 10:30am – 12:00pm Hands-on session for proteomics data analysis using Galaxy. (Candace Guerrero)
• 1:00pm – 1:30pm Introduction to multi-omics: proteogenomics and metaproteomics (Pratik Jagtap)
• 1:30pm-3:00pm Proteogenomic analysis using Galaxy framework I: RNASeq data and sequence database generation. (Getiria Onsongo)
• 3:30pm – 4:30pm Proteogenomic analysis using Galaxy framework II: Database search, filtering and visualization. (Pratik Jagtap)

Workshop materials:

• Workshop documentation
• Basics of data analysis using Galaxy platform: Short version and the Long version
• Slides