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Sean's Projects

smfsb icon smfsb

:exclamation: This is a read-only mirror of the CRAN R package repository. smfsb — Stochastic Modelling for Systems Biology

socially_structured icon socially_structured

Agent-based spatio-temporal model of dengue virus transmission for "Socially structured human movement shapes dengue transmission despite the diffusive effect of mosquito dispersal"

squire icon squire

SEIR transmission model of COVID-19. Documentation at:

stochasticad.jl icon stochasticad.jl

Research package for automatic differentiation of programs containing discrete randomness.

stochasticinference icon stochasticinference

C++ & R scripts to run stochastic models and use SMC/particle filter to fit stochastic models to data

temporalgillespie icon temporalgillespie

Rcpp implementation of the temporal Gillespie algorithm described in http://dx.doi.org/10.1371/journal.pcbi.1004579

terra icon terra

:space_invader: JS library for simple biological simulations and cellular automata

testpkg icon testpkg

a test package to illustrate use of RcppGSL, and linking one .h to multiple .cpp in Rcpp framework.

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