Preprocess bulk cut&tag or atac seq data with double insertion, adapt from JWY
Preprocess bulk cut&tag or atac seq data with double insertion, adapt from JWY
if use the inhouse version, plase use the following command to install the environment
mamba create -n atac -c conda-forge -c bioconda python=3.8 snakemake=5.20.1 bwa-mem2 macs2 samtools picardto run the inhouse version pipeline, run
cd bulkATACprocess; ./runbulkATACprocessInhouse.sh
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