skelviper Goto Github PK

abc-enhancer-gene-prediction

Cell type specific enhancer-gene predictions using ABC model (Fulco, Nasser et al, Nature Genetics 2019)

awesome-single-cell

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

bandnorm

Simple Normalization Method for single-cell Hi-C

bio2020

Biology learning materials in WHU

bubblecluster

Cluster single cell Hi-C data

bulk4cprocess

Process 4C-seq data

bulkatacprocess

Preprocess bulk cut&tag or atac seq data with double insertion, adapt from JWY

bulkhicprocess

Skelviper's version of bulk Hi-C data process pipeline in Xing Lab

c.origami

C.Origami, a prediction and screening framework for cell type-specific 3D chromatin structure.

charmtools

Scripts for CHARM data analysis

chromoskein

classrandom

用于看看我班是哪个幸运的同学要去参加各种活动。

clipmath

ctg

dip-c

Tools to analyze Dip-C (or other 3C/Hi-C) data

dip_c_snakemake

Skelviper's version of Dip-C pipeline using snakemake in Xing Lab.

eaglec

A deep-learning framework for predicting a full range of structural variations from bulk and single-cell contact maps

evaluate-schi-c-imputation-methods

Evaluate scHi-C imputation methods

ewordsrem

一个不务正业生物狗用来背单词的软件

fastqsplitter

Splits fastq files evenly

genomics

Homework solution for Genomics by ZY in Wuhan University

ggl

graphmae

GraphMAE: Self-Supervised Masked Graph Autoencoders in KDD'22

hic_basic

hicorr

HiCorr: a Hi-C data bias-correction pipeline

higashi

Forked from ma-compbio. Learn the higashi algorithm and add my own notes to it.

hires

Scripts for HiRES analysis

hires_utils

scripts for hires pipline

hmm-gmm-timing-strategy

hmms_stock_market

Contains all code related to using HMMs to predict stock market prices.