sccwrp / soc_tier_3_public

Tier 3: Species models and analysis for South Orange County

SOC_Tier_3_Public

Code index

1 - 00_Format_chub_data_and_model.R 2 - 01_Chub_model.R 3 - 02_Willow_model.R 4 - 03_Combine_suitability.R 5 - 04_Chub_flow_targets.R 6 - 05_overall_suitability.R 7 - 06_Suitability_Maps.R

00_Format_chub_data_and_model.R

formatting and cleaning of Wulff et al data to build models

produces models and figures

Depth

00_chub_Adult_depth_Prob_curve.png chub_depth_mod.RData

Velocity

00_chub_Adult_velocity_Prob_curve.png 00_chub_adult_velocity_prob_curve_data.csv

01_Chub_model.R

calculates the percentage of time that Q is within the flow ranges define by the models and Taniguchi-Quan et al xxxx

DFs for each node, scenario and hydraulic saved separately in "output_data/Chub"

02_Willow_model.R

calculates the percentage of time that Q is within the flow ranges define by Willow_Flow_Ranges_Ruleset.csv and Taniguchi-Quan et al xxxx

Current conditions and water conservation included. Produces two files:

02_Willow_Current.csv 02_Willow_WaterCons.csv

03_Combine_suitability.R

combines all chub and willow models and calculates suitability based on percentage of time Q is within limits for each scenario

dfs produced:

suitability per year

03_Willow_time_stats_combined_current_water_conservation.csv 03_Chub_time_stats_combined_water_conservation.csv

overall suitability

03_chub_suitability_combined_years_all_probs_current.csv 03_willow_suitability_combined_years_all_probs_current.csv

04_Chub_flow_targets.R

extracts flow targets for chub for each node based on Q limits and calculation from model run. filters to only main channel slice

04_chub_limits_calcs_best_slice.csv 04_chub_flow_targets_best_slices_only.csv ## flow targets for each node

05_overall_suitability.R

defines overall class for each Node, species and scenario:

05_chubs_suit_class_wide_updated_current_50_prob.csv # based on medium probability 05_willow_suit_class_wide_updated_current_watercons.csv

06_Suitability_Maps.R

Creates suitability maps for each species