1 - 00_Format_chub_data_and_model.R 2 - 01_Chub_model.R 3 - 02_Willow_model.R 4 - 03_Combine_suitability.R 5 - 04_Chub_flow_targets.R 6 - 05_overall_suitability.R 7 - 06_Suitability_Maps.R
formatting and cleaning of Wulff et al data to build models
produces models and figures
00_chub_Adult_depth_Prob_curve.png chub_depth_mod.RData
00_chub_Adult_velocity_Prob_curve.png 00_chub_adult_velocity_prob_curve_data.csv
calculates the percentage of time that Q is within the flow ranges define by the models and Taniguchi-Quan et al xxxx
DFs for each node, scenario and hydraulic saved separately in "output_data/Chub"
calculates the percentage of time that Q is within the flow ranges define by Willow_Flow_Ranges_Ruleset.csv and Taniguchi-Quan et al xxxx
Current conditions and water conservation included. Produces two files:
02_Willow_Current.csv 02_Willow_WaterCons.csv
combines all chub and willow models and calculates suitability based on percentage of time Q is within limits for each scenario
dfs produced:
suitability per year
03_Willow_time_stats_combined_current_water_conservation.csv 03_Chub_time_stats_combined_water_conservation.csv
overall suitability
03_chub_suitability_combined_years_all_probs_current.csv 03_willow_suitability_combined_years_all_probs_current.csv
extracts flow targets for chub for each node based on Q limits and calculation from model run. filters to only main channel slice
04_chub_limits_calcs_best_slice.csv 04_chub_flow_targets_best_slices_only.csv ## flow targets for each node
defines overall class for each Node, species and scenario:
05_chubs_suit_class_wide_updated_current_50_prob.csv # based on medium probability 05_willow_suit_class_wide_updated_current_watercons.csv
Creates suitability maps for each species