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sbslee avatar sbslee commented on June 5, 2024

Two of the four warnings disappeared when I updated the conf.py file to include the following (a7a9806):

# -- Path setup --------------------------------------------------------------

# If extensions (or modules to document with autodoc) are in another directory,
# add these directories to sys.path here. If the directory is relative to the
# documentation root, use os.path.abspath to make it absolute, like shown here.

import os
import sys
sys.path.insert(0, os.path.abspath('.'))
sys.path.insert(0, os.path.abspath('../'))

Two warnings still remain:

Running Sphinx v3.5.4
loading translations [en]... done
making output directory... done
building [mo]: targets for 0 po files that are out of date
building [html]: targets for 5 source files that are out of date
updating environment: [new config] 5 added, 0 changed, 0 removed
reading sources... [ 20%] api
reading sources... [ 40%] changelog
reading sources... [ 60%] cli
reading sources... [ 80%] index
reading sources... [100%] readme

WARNING: autodoc: failed to import module 'BedFrame' from module 'fuc.api'; the following exception was raised:
No module named 'pandas'
WARNING: autodoc: failed to import module 'VcfFrame' from module 'fuc.api'; the following exception was raised:
No module named 'pandas'
looking for now-outdated files... none found
pickling environment... done
checking consistency... done
preparing documents... done
writing output... [ 20%] api
writing output... [ 40%] changelog
writing output... [ 60%] cli
writing output... [ 80%] index
writing output... [100%] readme

generating indices... genindex py-modindex done
writing additional pages... search done
copying static files... done
copying extra files... done
dumping search index in English (code: en)... done
dumping object inventory... done
build succeeded, 2 warnings.

The HTML pages are in _build/html.
Updating searchtools for Read the Docs search...

from fuc.

sbslee avatar sbslee commented on June 5, 2024

The remaining warnings disappeared when I updated the conf.py file to include the following (697e00c):

autodoc_mock_imports = [
    'numpy',
    'pandas',
    'pyranges'
]

from fuc.

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