rowling2392 Goto Github PK
Name: Ruolin Li
Type: User
Company: Erasmus MC
Bio: PhD student in medical and health data science
Location: Rotterdam, the Netherlands
Name: Ruolin Li
Type: User
Company: Erasmus MC
Bio: PhD student in medical and health data science
Location: Rotterdam, the Netherlands
'alto' is an R package that aligns topics from different LDA models, computes metrics for quantifying the goodness of alignment, and provides visualization functions to explore the alignment and robustness of topics across environments or LDA hyper-parameters.
Statistics and visualization for amplicon data
Data, scripts, and outputs for the Nat. Comm. paper "Analysis of Composition of Microbiomes with Bias Correction"
A curated list of awesome Machine Learning frameworks, libraries and software.
Code to reproduce the analyses from the paper "Benchmarking microbiome transformations favors experimental quantitative approaches to address compositionality and sampling depth biases"
Collection of pipelines, workflows and scripts for processing SNP and gene expression arrays and NGS data
Python code for part 2 of the book Causal Inference: What If, by Miguel Hernán and James Robins
CCLasso: Correlation Inference for Compositional Data through Lasso
Official Matplotlib cheat sheets
Accurate sample inference from amplicon data with single nucleotide resolution
Collection of deep learning scripts in Python and R
Deep representation learning for disease prediction based on microbiome data
singularity and Docker containers to easily get started with common dicom tools
Codes and sample data supporting the Dutch Microbiome Project. The preprint is currently available at https://www.biorxiv.org/content/10.1101/2020.11.27.401125v1 and full data can be requested from EGA (https://ega-archive.org/studies/EGAS00001005027) and Lifelines biobank (https://www.lifelines.nl/researcher)
Repository for data science book
Code repository of the Earth Microbiome Project.
Code repository for the online course Feature Selection for Machine Learning
Supplement for Frontiers article
Deep learning predictor of stool microbiome configuration from oral microbiome data
The gfoRmula package implements the parametric g-formula in R. The parametric g-formula (Robins, 1986) uses longitudinal data with time-varying treatments and confounders to estimate the risk or mean of an outcome under hypothetical treatment strategies specified by the user.
Microbial ecological network visualization clustering
GLMMs with adaptive Gaussian quadrature
Microbiome Projects from the Department of Genetics and Department of Gastroenterology and Hepatology , University Medical Centre Groningen
Scripts for Arabidopsis triterpene
A framework for prototyping and benchmarking imputation methods
Data repo for the ibean project of the AIR lab.
Infographic
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.