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cbw2021_module2_16s_analysis's Introduction

CBW2021 Module 2 (16S Analysis)

This is the data and script repository for the Canadian Bioinformatics Workshop's 2021 16S Analysis module.

Scripts

download_Willis_et_al_data.sh: This BASH script downloads the data from Willis et al. (https://academic.oup.com/femsle/article/366/13/fnz152/5538761) from the EBI repository.

qiime_commands.sh: An initial set of commands to produce QIIME results, including importing the downloaded reads to .qza format.

Data

The reads QIIME artifact file is around 500MB in size and is available externally, if needed, at: http://quoc.ca/static/CBW_Willis_reads.qza

Other pre-cooked artifact files are in qiime_artifacts.

cbw2021_module2_16s_analysis's People

Contributors

dianahaider avatar mwhall avatar rbeiko avatar

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